SimNIBS 2.0.1 Documentation

This documentation is thought to give a brief overview over SimNIBS in a step-by-step fashion. It is based on the example data set (discontinued in 2.1) (containing a realistic head model and a sphere model). So please first download and unpack it.

  • We use Gmsh to visualize the head meshes and the results of the field calculations. When you are not familiar with Gmsh, you can start with this short introduction.
  • The generation of the tetrahedral head meshes from MRI data is described here.
  • Two tutorials describe how to plan and execute FEM-based field calculations by means of the GUI for TMS and tDCS. In addition, a description of the GUI is provided.
  • SimNIBS uses FreeSurfer and FSL BET to segment the head. The accuracy of these segmentations strongly depends on the MR sequences used to image the head. Some information on the sequences which we use can be found here.

 Head Model  tDCS electrodes  Simulation result visualization in Gmsh

  • For the changelog, please follow this link
  • For documentation on the old 2.0.0 version, please follow this link
version2/documentation.txt · Last modified: 2018/07/27 18:51 by axel
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